Browse of TCMCG017C26896 protein

CDS

Accession Number	TCMCG017C26896
gbkey	CDS
Protein Id	OMO68743.1
Location	join(53996..54167,54363..54571,55148..55288,55541..55645,57171..57270,58853..58971,59061..59183,59304..59375,60153..60245,60867..60980,61064..61186,61369..61554,61651..61725,62514..62650,63530..63664,63859..64004,64089..64154,65286..65392,65551..65631,65734..65808,65913..66014,66894..67062,67220..67365,67542..67625,67709..67809,68086..68239,68380..68454,68574..68709,68855..69479,70246..70306,70830..70975,71080..71231,72161..72473,72568..72744,73402..73498,73915..74145,74231..74314,74406..74513)
GeneID	InterPro:IPR003029
Organism	Corchorus olitorius
locus_tag	COLO4_29434

Protein

Length	1779aa
Molecule type	protein
Topology	linear
Data_file_division	PLN
dblink	BioProject:PRJNA215141, BioSample:SAMN03160584
db_source	AWUE01020354.1
Definition	hypothetical protein COLO4_29434 [Corchorus olitorius]
Locus_tag	COLO4_29434

EGGNOG-MAPPER Annotation

COG_category	A
Description	Protein RRP5 homolog
KEGG_TC	-
KEGG_Module	-
KEGG_Reaction	-
KEGG_rclass	-
BRITE	ko00000        [VIEW IN KEGG] ko03009        [VIEW IN KEGG]
KEGG_ko	ko:K14792        [VIEW IN KEGG]
EC	-
KEGG_Pathway	-
GOs	GO:0000460        [VIEW IN EMBL-EBI] GO:0000462        [VIEW IN EMBL-EBI] GO:0000466        [VIEW IN EMBL-EBI] GO:0003674        [VIEW IN EMBL-EBI] GO:0005488        [VIEW IN EMBL-EBI] GO:0005515        [VIEW IN EMBL-EBI] GO:0005575        [VIEW IN EMBL-EBI] GO:0005622        [VIEW IN EMBL-EBI] GO:0005623        [VIEW IN EMBL-EBI] GO:0005634        [VIEW IN EMBL-EBI] GO:0005654        [VIEW IN EMBL-EBI] GO:0005730        [VIEW IN EMBL-EBI] GO:0006139        [VIEW IN EMBL-EBI] GO:0006364        [VIEW IN EMBL-EBI] GO:0006396        [VIEW IN EMBL-EBI] GO:0006725        [VIEW IN EMBL-EBI] GO:0006807        [VIEW IN EMBL-EBI] GO:0008134        [VIEW IN EMBL-EBI] GO:0008150        [VIEW IN EMBL-EBI] GO:0008152        [VIEW IN EMBL-EBI] GO:0009987        [VIEW IN EMBL-EBI] GO:0010467        [VIEW IN EMBL-EBI] GO:0016070        [VIEW IN EMBL-EBI] GO:0016072        [VIEW IN EMBL-EBI] GO:0022613        [VIEW IN EMBL-EBI] GO:0030490        [VIEW IN EMBL-EBI] GO:0030684        [VIEW IN EMBL-EBI] GO:0031974        [VIEW IN EMBL-EBI] GO:0031981        [VIEW IN EMBL-EBI] GO:0032040        [VIEW IN EMBL-EBI] GO:0032991        [VIEW IN EMBL-EBI] GO:0034470        [VIEW IN EMBL-EBI] GO:0034641        [VIEW IN EMBL-EBI] GO:0034660        [VIEW IN EMBL-EBI] GO:0042254        [VIEW IN EMBL-EBI] GO:0042274        [VIEW IN EMBL-EBI] GO:0043170        [VIEW IN EMBL-EBI] GO:0043226        [VIEW IN EMBL-EBI] GO:0043227        [VIEW IN EMBL-EBI] GO:0043228        [VIEW IN EMBL-EBI] GO:0043229        [VIEW IN EMBL-EBI] GO:0043231        [VIEW IN EMBL-EBI] GO:0043232        [VIEW IN EMBL-EBI] GO:0043233        [VIEW IN EMBL-EBI] GO:0044085        [VIEW IN EMBL-EBI] GO:0044237        [VIEW IN EMBL-EBI] GO:0044238        [VIEW IN EMBL-EBI] GO:0044422        [VIEW IN EMBL-EBI] GO:0044424        [VIEW IN EMBL-EBI] GO:0044428        [VIEW IN EMBL-EBI] GO:0044446        [VIEW IN EMBL-EBI] GO:0044464        [VIEW IN EMBL-EBI] GO:0046483        [VIEW IN EMBL-EBI] GO:0070013        [VIEW IN EMBL-EBI] GO:0071704        [VIEW IN EMBL-EBI] GO:0071840        [VIEW IN EMBL-EBI] GO:0090304        [VIEW IN EMBL-EBI] GO:1901360        [VIEW IN EMBL-EBI] GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:   ATGGCGGCAGCGTCTTCCAAGAAACCTCAGAAGAAAAAATCCAATGAAGGGAAACCAAAGTTCAATAAAGCGTCCAAGAAACAGTTTAAAACGAAGAAGAATTCAAACGACGCCGTGAAGTCTGACGCTGTAGCTTTGCAGCTAGAAGACGATGTCCCTGACTTCCCTAGAGGTGGGGCTAGTTCTTTGAGCAAACAGGAACGTGATGAAATCCGAGCTGAAGTAGATGCGGAATTCGAGGCAGAGGAGCGAGCATCAAACAAGAATAAGAGGAAGAAGTTGCAGAAGAAGAGCCAGGTCATGCCAGATGACTTTGGTTCACTTTTTGGTGATGGCATTATGGGCAAGCTACCAAAATACGCCAACAAAATAACATTGAAGAATATTTCTCCTGGAATGAAGCTCTGGGGAGTTGTTGCCGAAGTAAATGAGAAGGACCTTGTAATTAGCCTTCCAGGGGGGTTACGTGGTTTAGTTCGAGCAGCTGATGCTGTCGATTCTGTCCTCGCTGATGAAGTTGAGTTGGATGATGATAAGAAGGAGACTGGCAAAAGAAGGATATGGCTTTCCTTGCGTCTCTCTTTGTTGCACAAAGGCTTCACCTTGGATGCTGTTCAAGAAGGGATGGTACTTACTGGAAATGTGAAAAGCATTGAAGATCATGGATACATTCTTCACTTCGGGTTGTCTTCGTTCACGGGGTTTTTACCAAAAGATGGTGAATTCGAAAGCAGGGACATTGAAGTGAGGGTCGGGCAGCTCGTACAAGGGGTTGTTAGGCGTATTGATAAAACTCGCAAAGTTGTTTATTTCAGTTCCGACTCAGATACCGTGTCTAAATGTGTAACCAAGGATCTTAAGGGCATTTCAATTGATCTTCTTATTCCTGGCATGTTGGTCAATGCTTCCGTGCGATCCACCCTTGAGAATGGGATATTATTATCATTCCTAACATACTTTACTGGAACAGTTGATATGTTTCATTTACAAAATAAATTCCCAACTAAGGACTGGAAGGATGATTACAATCAAAATAGAAAGGTTAATGCTCGGATATTATTTATTGATCCCTCAACCAGAGCAGTTGGCTTGACCCTAAATCCTCATCTTGTTCATAATAAAGCGCCTCCTTCGCATGTCAACATTGGAGAGATTTATGACCAGTCAAAAGTGATCAGGGTTGATAGAGGCTTAGGCCTTCTGCTAGACATCCCTTCTAAACCCGTATCAACTCCAGCCTATGTGAATATATCTGATGTGGCTGAAGAAGAAGTCAGGAAGCTGGAAAAGAAGTTCAAGGAAGGCAGCCAAGTTCGTGTTCGGATTCTTGGGTTTAGGCAGTTGGAAGGGCTTGCCACTGGTATTTTAAAGGCCAGCGCATTTGAAGGGCCAGTGTTCACTCATGCAGATGTGAAGCCTGGGATGGTTGTAAGAGCTAAAGTCATTGCTCTTGACAGCTTCGGTGCCATTGTGCAATTTCCTGGTGGTGTGAAGGCACTATGTCCCACTCGTCATATGTCTGAATTTGAAATTGCAAAACCTGGAAAGAAGTTTAAGGTTGGAGCTGAATTGGTCTTCCGGGTACTAGGTTGCAAGTCCAAGAGAGTAACTGTCACTCACAAGAAAACTCTAGTGAAATCAAAACTTGGTATTATTAGTTCTTATGCTGATGCAACTGAGGGACTAATAACACATGGATGGATAACTAAGATTGAAAAGCATGGATGCTTTGTGCGGTTCTACAGTGGGGTCCAAGGATTTGCACCCAGATTTGAACTTGGCTTGGGACCCGGAGATGATCCAAGTTCAATGTATCATGTGGGACAAGTTGTTAAATGTAGAGTAATCGGTTCTAGCGCTGCTTCACGGCGTATCAATCTTAGTTTCCAGATGAAGCCTGTGAGGGTTTCTGAAGATGATATGGTCAAGCTGGGCAGTGTTGTTTCAGGAGTTGTTGATGGGATTACCCCATCTGCGGTAGTTATACAAGTTAACTCCAAAGCTCACTTGAAGGGCACAATATCTAATGAACATTTGGCAGATCATCATGAGAGTGCTACCTTGTTGAAGTCAGTCCTGAAGCCTGGATATAAGTTTGACCAGCTGCTGGTTCTAGATATTGAGGGCAACAACATTTTACTCTCTGCGAAATACTCTCTCATAAATTTGGCTGAACAACTACCTTCTGATATCAGTCAGACCCGCCCTAACTCAGTGGTTCACGGGTATGTTTGTAATTTAATTGAAACTGGCTGCTTTGTCCGCTTTCTTGGGCGCTTAACTGGTTTCTCACCTAGGAGCAAGGCAACGGATGACAATAGAGCTGATCTCTCAGGAGCCTTTTATGTGGGTCAATCTGTTCGGAGTAATATACTCGATGTAAATAGTGAAACAGCAAGAATAACACTTTCTTTGAAGCAGTCATCTTGTTCTTCGACCGATGCATCCTTTATCCAAGAATACTTTCTTTTGGAAGAGAAGATTGCTAAGCTACAATCATCAGAATCTGATGGATCTGAGTTGAAGTGGGTCGAAGCCTTTACTGTTGGCAGTGTCATTGAGGGAAAAATTGGGGAGGCAAAGGATATTGGAGTGGTTGTCAGCTTTGACAAATACAACGATGTTTTAGGCTTTATCACACATCATCAATGTGAGCATACTTTGGAAACAGGAACTATTGTTCAAGCTGCAGTACTTGATGTGGCCAAGGCAGAACGCCTTGTTGATTTATCCTTAAAACCAGAGTTTGTTGATAAATCTCGAGAGGAAGGTTCCAAAGGCAAAACTCACAAGAAGAAGCGCAAAAGAGAAGCTTCCAATGACTTGGAGGTGCATCAGACAGTCAATGCAGTTGTGGAGATTGTGAAAGAGCATTACTTGGTTCTTGCAATTCCAGAGCATAACCATTCAATAGGTTATGCATCAATAGCAGATTATAATACACAGAAGTTTCCTCAGAAACATTTTGTGAATGGACAGAGGGTTAATGCCACTGTTATGGCCCTTCCAAGCCCTGCAACTTCAGGGAGGTTGCTTTTGCTCCTTAATTCTATTAGCGAGGTTACTGACACATCCAGTTCGAAAAGGGCCAAAAAGAAGTCTAGTTATAATGTGGCATCCTTGGTTTCTGCAGAGGTTACTGAAATAATGCCACTTGAATTGAGATTGAAATTTGGAATTGGTTTCCGTGGACGGGTTCATATCACAGAGGTTAATGATGATAATGTTCTCGAAAATCCATTTGCAAACTTCAAAATTGGGCAGACAATCACTGCAAAGATTGTGGGGAAGGCAAATCAGAAAGGACATTTATGGGATTTATCTGTCAAACCTACAATGCTTGCTGGTGAATCCACAATGGATGAATTTCATTTTTCAACTGGACAACTTGTCACTGGTTATGTCTACAAAGTAGACGCTGAATGGGCCTGGCTAACCATATCCCGTAATGTGAAAGCTCAGCTATATATTCTTGATAGTGCATGTGAACCTGATGAGCTGCAGCATTTCCAGGAGCACTTCAAAATTGGGAAGGCTGTTTCTGGTCATGTTTTGAATATTAACAAGGACAAAAAGCTTTTACGTTTAGTGCGACATCCTCTAGGTGTTCTTTCTACTGATGGTGAAAGTAAAAAGACAGGTGACTCAGATAATAACATTTCAGATGAAAGTGTTACAGCTCATATTCATGAAGGAGATATTTTGGGTGGAAGAATTTCCAAAATACTTCCCGGTGTAGGTGGATTGGTTGTCCAAATAGGTCCTCACACTTATGGTAGGGTTCATTTTACGGAACTGAAGGACAAATGGGACTCTGACCCATTATCTGGATATAGTGAGGGGCAATTTGTTAAGTGCAAGGTCCTAGAAATCAGCCATTCAGGCAAGGGCACTATTCACATTGATTTATCATTACGCTTTTCTTTGGACGGCATGCTTCCCAAGAATCCTTCAGAAATCTGCAGTGACTTGGACTCTTCAACCAATCATGCTGAAAGAATTGAGGATCTACATCCCAATATGGCTGTGCAGGGTTATGTTAAAAACATTACCCCAAAAGGATGCTTTATCCTGCTTTCAAGGAAGGTAGATGCAAAAATTCTCCTGTCAAATTTATCTGATGGATATATTGATGACCCTATAAAGGAATTCCCCATTGGAAAGCTCGTAGTTGGAAGGGTATTAGCAGTAGAGCCTTTGTCAAAGCGAGTTGAAGTCACCTTAAAACAATCAAATAGTAAGGGTGCATCAAAATCTGAAGTTAATGAGTTTAGTAGCCTGCATGTTGGAGATATAGTTTCAGGCAGAATCAGGCGTGTGGAGTCGTACGATATTGATAACCAACTACCTTCAGAAGAAGAGTCTGAAGAAGACACCGAAGAAAATGGTGTCATGGATGAGACAAGATCACTATTATTGACTGACAGCACTCTTGGGATGGATATCGAGTATGAAAATGGACCAAGCTCTGTTCTTGCTCAAGCAGAATCAAGAGCTTCAATTCCTCCACTTGAGGTCACTCTTGATGACATTGAGCACTCTGACTTGGATATATTAGCCAGTCAAAATCAAGCAAGTAATGACGCAGTCGACATGGATGAGAAGAGTACGAGACGGGCTAAGAAGAAAGCAAAGGAGGATAGGGAGCGGGAAATAAGAGCTGCTGAGGAGAGACAATTAGAGAAGGATGTTCCAAGAACTGCTGATGAATTTGAGAAACTTGTTAGAAGTTCTCCTAATAGCAGTTTTGTCTGGATAAAATACATGGCTTTCATGCTCAATTCAGCTGATATTGAGAAAGCCCGTGCTATTGCTGAAAGGGCTTTGAGGACAATAAACGTTCGAGAAGAGAATGAGAAGTTGAATATATGGGTGGCTTACTTCAATCTGGAGAATCAATATGGGAATCCTCCCGAGATTTGGTTGAGGCGGGTGCAGATGCTGTTGATGCGACAGCAGGATGGGATTCAATCTGTTGTAAATCGTGCTGTAATATGCCTTCCACGCCATAAGCATATTAAGTTTATTTCACAGACAGCCATACTTGAGTTCAAATCTGGGGTACCTGATAGGGCACGATCTATGTTTGAAGGAATTTTAAGGGAGTACCCAAAGAGAACAGATTTGTGGAGCATCTACCTTGATCAAGAGATTCGGCTTGGGGACGAGGATGTGATTCGCGCTCTATTTGAGAGGGCAATCAGCTTGAGCTTACCACCCAAAAAAATGAAATTCTTATTCAAGAAGTATCTCGATTATGAGAAATCTCTTGGTGACGAGGAAAGAATTGAATCTGTCAAACAAAAGGCGATGAATTACGTTGAAAGTACACTAACTTGA

Protein:   MAAASSKKPQKKKSNEGKPKFNKASKKQFKTKKNSNDAVKSDAVALQLEDDVPDFPRGGASSLSKQERDEIRAEVDAEFEAEERASNKNKRKKLQKKSQVMPDDFGSLFGDGIMGKLPKYANKITLKNISPGMKLWGVVAEVNEKDLVISLPGGLRGLVRAADAVDSVLADEVELDDDKKETGKRRIWLSLRLSLLHKGFTLDAVQEGMVLTGNVKSIEDHGYILHFGLSSFTGFLPKDGEFESRDIEVRVGQLVQGVVRRIDKTRKVVYFSSDSDTVSKCVTKDLKGISIDLLIPGMLVNASVRSTLENGILLSFLTYFTGTVDMFHLQNKFPTKDWKDDYNQNRKVNARILFIDPSTRAVGLTLNPHLVHNKAPPSHVNIGEIYDQSKVIRVDRGLGLLLDIPSKPVSTPAYVNISDVAEEEVRKLEKKFKEGSQVRVRILGFRQLEGLATGILKASAFEGPVFTHADVKPGMVVRAKVIALDSFGAIVQFPGGVKALCPTRHMSEFEIAKPGKKFKVGAELVFRVLGCKSKRVTVTHKKTLVKSKLGIISSYADATEGLITHGWITKIEKHGCFVRFYSGVQGFAPRFELGLGPGDDPSSMYHVGQVVKCRVIGSSAASRRINLSFQMKPVRVSEDDMVKLGSVVSGVVDGITPSAVVIQVNSKAHLKGTISNEHLADHHESATLLKSVLKPGYKFDQLLVLDIEGNNILLSAKYSLINLAEQLPSDISQTRPNSVVHGYVCNLIETGCFVRFLGRLTGFSPRSKATDDNRADLSGAFYVGQSVRSNILDVNSETARITLSLKQSSCSSTDASFIQEYFLLEEKIAKLQSSESDGSELKWVEAFTVGSVIEGKIGEAKDIGVVVSFDKYNDVLGFITHHQCEHTLETGTIVQAAVLDVAKAERLVDLSLKPEFVDKSREEGSKGKTHKKKRKREASNDLEVHQTVNAVVEIVKEHYLVLAIPEHNHSIGYASIADYNTQKFPQKHFVNGQRVNATVMALPSPATSGRLLLLLNSISEVTDTSSSKRAKKKSSYNVASLVSAEVTEIMPLELRLKFGIGFRGRVHITEVNDDNVLENPFANFKIGQTITAKIVGKANQKGHLWDLSVKPTMLAGESTMDEFHFSTGQLVTGYVYKVDAEWAWLTISRNVKAQLYILDSACEPDELQHFQEHFKIGKAVSGHVLNINKDKKLLRLVRHPLGVLSTDGESKKTGDSDNNISDESVTAHIHEGDILGGRISKILPGVGGLVVQIGPHTYGRVHFTELKDKWDSDPLSGYSEGQFVKCKVLEISHSGKGTIHIDLSLRFSLDGMLPKNPSEICSDLDSSTNHAERIEDLHPNMAVQGYVKNITPKGCFILLSRKVDAKILLSNLSDGYIDDPIKEFPIGKLVVGRVLAVEPLSKRVEVTLKQSNSKGASKSEVNEFSSLHVGDIVSGRIRRVESYDIDNQLPSEEESEEDTEENGVMDETRSLLLTDSTLGMDIEYENGPSSVLAQAESRASIPPLEVTLDDIEHSDLDILASQNQASNDAVDMDEKSTRRAKKKAKEDREREIRAAEERQLEKDVPRTADEFEKLVRSSPNSSFVWIKYMAFMLNSADIEKARAIAERALRTINVREENEKLNIWVAYFNLENQYGNPPEIWLRRVQMLLMRQQDGIQSVVNRAVICLPRHKHIKFISQTAILEFKSGVPDRARSMFEGILREYPKRTDLWSIYLDQEIRLGDEDVIRALFERAISLSLPPKKMKFLFKKYLDYEKSLGDEERIESVKQKAMNYVESTLT